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Scientist salary in San Diego, CA, 2026

How much does a Scientist make in San Diego, CA?

Average base salary

$113,274
7%
above national average
Average $113,274
Low $75,268
High $170,469

The average salary for a scientist is $113,274 per year in San Diego, CA. 206 salaries taken from job postings on Indeed in the past 36 months (updated November 7, 2026).

Scientist job openings in San Diego, CA

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Scientist I – Ingredient Disco...
Debut Biotech
San Diego, CA
$90,000 - $120,000 a year
Full-time
2 days ago

Highest paying companies for Scientist in San Diego, CA

Average year pay is based on job postings on Indeed in the past 36 months.
L3Harris
 
$206,000per year
View company
ASK Staffing
 
$168,584per year
Advent Global Solutions
 
$167,440per year
AllSTEM Connections
 
$166,400per year
Fortira
 
$156,000per year
FICO
 
$155,491per year

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Highest paying cities for Scientists near San Diego, CA

  1. San Jose, CA
    $170,921 per year
  2. San Francisco, CA
    $148,694 per year
  3. Fremont, CA
    $127,169 per year
  4. San Diego, CA
    $113,274 per year
  5. South San Francisco, CA
    $111,842 per year

Where can a Scientist earn more?

Compare salaries for Scientists in different locations
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Frequently Asked Questions (FAQs) about Scientist

The average salary for a Scientist is $113,274 per year in San Diego, CA. This figure is based on 206 salaries taken from job postings on Indeed in the past 36 months, last updated on November 7, 2026.

Scientist jobs on Indeed - find your next one today.

Scientist salaries in San Diego, CA typically range between a low of $75,268 and a high of $170,469 per year, depending on experience and the hiring company.

Some of the highest-paying cities for Scientist in San Diego, CA include San Jose, CA at $170,921 per year, San Francisco, CA at $148,694 per year, and Fremont, CA at $127,169 per year.

Based on recent job postings on Indeed, some of the top-paying companies for Scientist in San Diego, CA include L3Harris ($206,000 per year) and ASK Staffing ($168,584 per year).

Compensation can vary based on the specific niche and level of responsibility within the field. Here is how the average Scientist salary in San Diego, CA compares to related positions:

  • Chief Scientist: Average $203,011 per year
  • Entry Level Scientist: Average $64,809 per year
  • Junior Scientist: Average $77,931 per year
  • Senior Scientist: Average $127,888 per year

How much do similar professions as Scientist get paid in San Diego, CA?

Chief Scientist

Job openings
Average $203,011 per year