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System engineer salary in San Diego, CA, 2026

How much does a System Engineer make in San Diego, CA?

Average base salary

$127,995
same
as national average
Average $127,995
Low $82,725
High $198,039

The average salary for a system engineer is $127,995 per year in San Diego, CA. 341 salaries taken from job postings on Indeed in the past 36 months (updated July 17, 2026).

System Engineer job openings in San Diego, CA

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System of Systems Requirements...
Booz Allen Hamilton3.9out of 5 stars.
San Diego, CA
$86,900 - $198,000 a year
Full-time
3 days ago

Highest paying companies for System Engineer in San Diego, CA

Average year pay is based on job postings on Indeed in the past 36 months.
Indotronix International Corp
 
$243,360per year
View company
Apple
 
$202,575per year
View company
El Clasificado
 
$198,850per year
View company
Zoox
 
$193,500per year
View company
Crystal Equation
 
$190,320per year
View company
Cynet Systems
 
$190,000per year
View company

Highest paying cities for System Engineers near San Diego, CA

  1. San Francisco, CA
    $181,146 per year
  2. San Jose, CA
    $166,103 per year
  3. Santa Clara, CA
    $156,715 per year
  4. El Segundo, CA
    $151,056 per year
  5. Los Angeles, CA
    $148,062 per year

Where can a System Engineer earn more?

Compare salaries for System Engineers in different locations
vs

How much do similar professions as System Engineer get paid in San Diego, CA?

Chief System Engineer

Job openings
Average $185,906 per year

Junior System Engineer

Job openings
Average $104,469 per year

Senior System Engineer

Job openings
Average $145,900 per year